Sentence examples for using the regular expression from inspiring English sources

All such repeats longer than four amino acids were discovered in the 'misses' and 'hits', with a PERL script using the regular expression "[ACDEFGHIKLMNPQRSTVWY]{4,}".

The scorings of protein using the regular expression version of the phosphorylation motif can also be represented using this system, by assigning a value of one for relative information to each relevant position and assigning a score of 1 for each match to the regular expression found in a given protein sequence.

This script searches titles and abstracts using the regular expression '\b(?:At)?[A-Z]{2,4}\d{1,3}\b' [A-Z]{2,4}\d{1,3}\b'

Using the regular expression search function on IMG and in-house PERL algorithms, the Frankia genome were searched for proteins containing either conserved metal binding motifs obtained from the literature or high metal-binding potential as previously described [ 112].

To decide whether the CLASH targets and predictions refer to the same or different miRNA, we converted miRNA names to a simplified miR-number format, using the regular expression /[a-zA-Z]∗-[0-9]∗/.

If a regular expression matches a sequence, we check for the remaining mutations in the set, one after another, taking into account the numbering displacement found when using the regular expression.

These sequences are submitted to a "rigid" Boolean search for signal / pro- / mature regions with high identity to known conopeptide superfamilies and classes using the regular expressions described above.

MEME implemented multiple EMs while DREME used the regular expression approach.

Second, we used the Regular Expression function of Scansite (Obenauer et al., 2003) to identify known actin regulatory proteins that contain CXC or CC motifs (C: cysteine; X: any amino acid) within their first 10 residues, as motifs of this type are frequently palmitoylated (Fukata and Fukata, 2010).

We used the regular expressions numbers 1 and 2 presented in Table 11 for finding comments and texts.

The final regular expression pattern for the LRRCE capping motif and its mapping to the three-dimensional structure of bovine decorin are shown in Figure 2. Using the LRRCE regular expression pattern, a total of 175 sequences were retrieved by ScanProsite from the UniProt database (Swiss-Prot release 55.1, TrEMBL release 38.1) [ 48].