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oryzae strains by developing a QTL approach using the reference mapping population made of recombinant inbred lines (RIL) derived from the cross between IR64 and Azucena. 2.
All reads from all subspecies were pooled and a de novo assembly was created using Newbler v.2.6 (454 Life Sciences 2006 2011), after which all reads from all subspecies were mapped onto this assembly using the reference mapping function in CLCBio Workbench.
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By using the reference map, a threshold on morphologic feature is determined to label the unknown cells as flood and non-flood (binary classification).
These tags were mapped to the OWB framework map of 2,382 markers [31] by considering tags as dominant markers and anchoring the tags using the reference map.
Positions of markers were determined by using the reference map of INRA2006 http://rhdev.toulouse.inra.fr/Do=Maps.inra.fr/Do=Maps
Of these markers, 32,945 SNPs (93.9%) were shared with the PstI-MseI library SNPs mapped using the reference map build from the wheat 9K iSelect assay.
Organism-specific pathway maps for 843 species, including both eukaryotes and prokaryotes, were subsequently generated using the reference pathway map based on KEGG Orthology.
The same FaFAD1 allele was detected in both bulked pools either using the reference genome to map the reads or after de novo assembly.
The PET image reconstructed using the reference CT-based μ-map was considered as the reference PET.
The PET reconstruction accuracy was assessed, for both tracers, by comparing the reference PET images, corrected for attenuation using the reference CT-based μ-map, to the PET images corrected using the proposed method.
Virginia matches the same region mapped using the reference genome.
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