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Phase identification was carried out using the reference database software.
We then assigned the MOTUs to known taxonomic categories using the reference database we had constructed for trees.
Using the reference database, they identified presumed yellowfin tuna samples as bigeye tuna, and identified the samples as yellowfin or bigeye using the all-records database.
The analysis of the spectra was carried out using the reference database v3.3.1.0 (Bruker Daltonik, GmbH, Bremen, Germany) containing 4613 entries after an update in October 2012.
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Taxonomic identities were assigned for representative sequences of each OTU using the reference databases Greengenes for bacteria and archaea.
We used the reference database Biblioteca Virtual em Saúde (BVS) to perform a non-systematic scientific literature survey aiming to count all existing publications up to June 8 , 2014 with the keyword "Angola" and to produce a scientific publications dataset to be compared with other databases.
We designed 60-mer oligonucleotides using the Reference Sequence database (RefSeq) [ 26] and the UniGene database [ 27] because of their complementary features.
MetaCluster-TA outperforms MetaCluster 5.0 as a binning tool since binning itself can be more sensitive and precise given long virtual contigs and the binning results can be improved using the reference taxonomic database.
One of the limitations of the analyses conducted so far is that they were performed using the reference genome databases and not the individual genomes.
Each sequence was used as the query sequence once while the rest were used as the reference database and this was looped over each sequence.
Metacyc was used as the reference database and pathway hole filler in Pathologic was used to infer missing links in pathways [31].
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