Sentence examples for using the protein sequence from inspiring English sources

osFP affords a user-friendly interface that can be used to predict the oligomeric state of FP using the protein sequence.

C) The upper portion illustrates the SCN9A protein with functional domains predicted by the SMART program using the protein sequence (NP_002968).

Nucleic acid MSAs were performed with DAMBE [28] using the protein sequence alignment as a template.

Furthermore, Russo, Takezaki and Nei [27] showed that when sequences diverge using the protein sequence yields more accurate reconstructions of the true phylogeny.

Using the protein sequence of the 7 known B. subtilis ECF-sigma factors, a novel protein (SACOL1827) bearing homology to the ECF-sigma factors σM and σYlaC was discovered in the S. aureus genome (Table 1).

Similarity searches based on BLASTp using the protein sequence of the human θ paralog (accession number: AAI09211) returned no structure from PDB. Homology modeling with SWISS-MODEL [31] only produced a model between amino acid positions 291 and 347.

Using the protein sequences for each of the representative members for the different plant lectin families, pFam identifiers and conserved domains, a total of 329 putative lectin sequences were identified in the japonica genome (Table 1).

P. yoelii annotations were obtained from PlasmoDB and/or the result of BLAST searching using the protein sequences encoded by the differentially expressed genes compared to all available Plasmodium genomes on PlasmoDB.org and NCBI.

The results of using the protein sequences were visualised in unrooted phylogenetic tree.

Using the protein sequences of the ten species, orthologous gene clusters were constructed with OrthoMCL [ 67] using default settings.

The conserved domains were generated by MEME [ 43] using the protein sequences of all members of the subfamily of WRKY proteins to which the protein belongs.