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In the present study, we estimated the q-values using the procedure introduced by Dalmasso et al.[45] and considering a stratified approach (by chromosome) as proposed by Sun et al [46].
FDR was calculated for each correlation from these resulting p-values using the procedure introduced by Storey [ 17].
We also estimate the signal-to-noise ratio based on predictions for human 3' UTRs and using the procedure introduced to validate PicTar [ 10].
To account for multiple comparisons false discovery rates (FDR) were then calculated for each comparison from these resulting p-values using the procedure introduced by Storey [ 17].
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The average Ct values were used to calculate the ratios for all the genes studied using the equation procedure introduced by Pfaffl (Pfaffl et al. 2002).
For this purpose, 6983 protein sequences from CBS subfamily were taken from the Pfam database (36) and analyzed using a Python script based on the procedure introduced by Halabi and co-workers (35).
The procedure introduced here is verified using analytical definitions of infinite orthotropic plates which physically resemble to laminated plates for (under) specific conditions, and is tested by performing experimental power injection method (PIM) for an actual, right-angled composite structure.
These have to be determined previously, preferably using the iterative procedure introduced in this paper.
The procedure introduced in API Spec.
Prepared using the procedure for making 14x.
Datasets of similarity-reduced peptides, MHCPEP-SRDS3, MHCBN-SRDS3, and IEDB-SRDS3, derived from the corresponding UPDS datasets using the similarity reduction procedure introduced by Raghava and previously used to construct the MHCBench dataset [20].
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