Sentence examples for using the prediction server from inspiring English sources

Modelling of the extracellular domains of porcine desmoglein 1 3D structure was made using the prediction server CPHmodels [ 14].

The amino acid sequence of porcine desmoglein 1 GenBank: DQ823082 was used and the prediction server proposes the crystal structure of C-cadherin (PDB ID: IL3W) [ 15] as a template (score: 189, E: 5e-48).

Targeting prediction was performed using the prediction of apicoplast targeting sequences (PATS) server (http://gecco.org.chemie.uni-frankfurt.de/pats/pats-index.php ).

Transmembrane domains of T. urticae ABCs were predicted using the SCAMPI prediction server [ 128].

In addition, differing mRNA secondary structures of the parvulin 5' UTR for several primates were predicted using the MFold prediction server [ 50].

Using the CBS prediction server we predicted the topology of the A. niger ortholog of Pmp22, which has been studied in Arabidopsis and in mammalian cells [ 22, 23].

Predicted transmembrane structures were obtained using the transmembrane prediction server TMHMM-2.0 http://www.cbs.dtu.dk/services/ and SMART database http://smart.embl-heidelberg.de/ with the complete protein sequences.

The plastid localization of these selected sequences were determined using the Chlorop1.1 prediction server [ 34]. ET planned and analyzed the microarray experiments and wrote the manuscript.

A structural model for Pep2 was generated using the fold prediction server Phyre2 (http://www.sbg.bio.ic.ac.uk/phyre2) based on the sequence of M. smegmatis Pep2.

Prediction of the subcellular localization of the putative signal peptide, chloroplast transit peptides and its cleavage site were carried out using the CBS prediction server's online program (http://www.cbs.dtu.dk/services/).dtu.dk/services/

We provide a public web service for NtraC analysis of amino acid sequences (www.modlab.deSoftwareNtraC) and invite the scientific community to scrutinize our NtraC domain model using this prediction server.