Sentence examples for using the phylogenetic tree from inspiring English sources

Using the phylogenetic tree, Njage and Buys (2015) reported the genetic similarity between commensal and pathogenic E. coli strains from lettuce and irrigation water, even at a distance of 246 km apart.

The hypothetical ancestral genome was determined using the phylogenetic tree information for this set of six species [ 35].

Therefore, we also reestimated the divergence times of the Pinaceous subfamilies and genera by using the phylogenetic tree obtained in the present study and three reliable fossil records.

For that purpose, the raw structural reliabilities (i, j) and (i) are calculated by the constrained folding with Pfold using the phylogenetic tree deduced from the concatenated alignment.

Finally, bootstrap support values were added to the maximum likelihood trees of the original sequence alignments using the phylogenetic tree summarization program SumTrees [ 80].

A multiple alignment was formed from the pairwise alignments with the Threaded-Blockset-Aligner (TBA/MultiZ) [ 36] using the phylogenetic tree presented in Figure 3 as guide.

PAML and SLR analysis were performed on the protozoa, apicomplexa, metazoa and vertebrate groups using the phylogenetic trees generated above.

Using the phylogenetic trees, we found 151 inconsistencies in the 1139 phylogenetic trees examined, which represents 13.3% of the total families studied (the set of corresponding alignments and trees can be downloaded at ftp://pbil.univ-lyon1.fr/pub/datasets/PLoS07).

UniFrac is a method to calculate a distance measure between samples using the phylogenetic trees.

We used the phylogenetic tree from PFAM for the LysR substrate domain (PF03466) to examine the evolutionary relationships between the LTTRs used in this study.

We used the phylogenetic tree structure (topology) inferred from 62 complete mt AA sequences which was reconstructed via a multidimensional vector space (MVS) method [2].