Sentence examples for using the phylogenetic approach from inspiring English sources

Potential sequence abnormalities that were identified by using the phylogenetic approach [30], [31], as performed manually and/or automatically by the MitoTool (http://www.mitotool.org; this software was designed by ourselves), were rechecked for the original sequencing electropherograms or resequencing.

Putative orthologous sequences, either from sunflower or from other Asteraceae species were identified for 18 out of 19 A. thaliana loci selected from the work of Zhao et al. [ 25] using the phylogenetic approach detailed in Methods.

To validate this study, we first used the phylogenetic approach, taking into account orthologs contained in trees of various complexities defined as follows.

However, there is very little work using the phylogenetic comparative approach to determine the genetic effects of the infection itself.

This produced gene lists composed of 18 377 genes using the TFBS/promoter database based on the -1500 to +500 genomic intervals and 13 177 when using the phylogenetic foot printing approach, in which the top ranking genes will have the largest number of normalized hits for binding sites in their promoters.

The analysis of the BOYER_NANOG_OCT4_SOX2 data set, that contains genes that bind all three transcription factors, produced top ranking E- and P-scores for the OCT related bindings site whereas the NANOG site showed moderate significance when using the phylogenetic foot printing approach.

The genus Silene (Caryophyllaceae) has been widely used to study the evolution of sexual systems and gender variation (Meagher 2007; Bernasconi et al. 2009; Charlesworth 2013; Weingartner and Delph 2014), and is one of the groups used for the phylogenetic approach (Desfeux et al. 1996; Rautenberg et al. 2010; Marais et al. 2011).

Keywords used to categorize species-typical nest structure are summarized in table 1. > To account for the statistical non-independence of datasets including multiple species, we analysed data using the phylogenetic generalized least squares (PGLS) approach, which incorporates phylogenetic relatedness of species into the error term of a regression model [ 10].

Reviewers at journals should insist on reasonable use of the phylogenetic approach applied by Bandelt and Salas in addition to the rules that these authors suggest.

For the prediction of candidate binding site motifs, we used the phylogenetic footprinting approach that allowed identification of the islands of conservation in the global multiple alignments of orthologous upstream DNA regions [ 27].

As it can be observed, the results obtained using this phylogenetic approach are in line with those derived from pairwise comparisons, in the sense that, again with the exception of COX I, purifying selection seems to be more efficient among Mt nu Contact residues with respect to the Exposed Noncontact group.