Sentence examples for using the phase software from inspiring English sources

To measure the extent of linkage disequilibrium between any pairwise markers, we first inferred phase and reconstructed haplotypes using the PHASE software (http://www.stat.washington. edu/stephens/phase.html) developed by Stephens et al, 2001).

Haplotypes were first estimated using the PHASE software [54], and then computed by logistic analyses using the Statistical Analysis System (SAS) program.

RBP4 haplotypes were determined using the PHASE software.

Haplotypes will be inferred using the PHASE software package [ 97].

Haplotypes were reconstructed using the PHASE software programme [ 48].

Haplotypes were constructed using the PHASE software program (PHASE 2.1, Department of Statistics, University of Washington, Seattle, WA) [ 61, 62].

Then, we used the PHASE software (http://www.bioinf.manchester.ac.uk/resources/phase) providing such partitioned models and performing Bayesian phylogenetic inferences [67].

We chose to use the Phase software, which provided the recombination parameter rho = 4Nec.

To estimate the recombination rate by the coalescent method, we used the Phase software (Crawford et al. 2004, Li and Stephens 2003).

Haplotype estimation was carried out using the Phase v2.1 software package.

Haplotypes of variants located in the same gene were determined using the PHASE 2 software created by Stephens et al. [ 18], or SNPHAP 1.3 software created by David Clayton http://www-gene.cimr.cam.ac.uk/clayton/software/snphap.txt.ac.uk/clayton/software/snphap.txt