Sentence examples for using the permutation option from inspiring English sources

However, after the P-value was corrected for multiple testing using the permutation option available in Haploview 3.2 software, a significant association was only found for haplotype ATCGA (P = 0.012, OR 0.17, 95% CI 0.05 0.54).

Using the permutation test method, with 10,000 permutations, we found 10 miRNAs were strongly correlated with survival (p≤0.005).

Correction for multiple testing was conducted using the permutation method.

Lower row: new MVPA results using the permutation framework.

For the group analysis, we used the permutation tool "randomise" with 5000 permutations (Nichols & Holmes, 2002).

We used the permutation test (1000 permutations) to estimate P-values.

Hence, we performed the analysis using the gene set permutation option.

Region-wide significance for both tests was estimated using the mperm option in PLINK which uses permutation to correct for multiple testing of all the markers within the region while taking linkage disequilibrium into account.

Empirical P-values were derived using 1000 permutations using the incorporated permutation feature of WebQTL.

To evaluate the significance of our results after correcting for the number of SNPs tested, we used the options –permutation 1000 and –permoutput, and corrected further for the two diseases tested.

For the detection of epistatic effects, 0.01 quantile F thresholds were determined by 1,000 permutation tests using the option "genowideforepistasy".