Sentence examples for using the peak sequence from inspiring English sources

The predicted score is computed by PeakRegressor using the peak sequence information.

We use these motifs to represent each peak sequence as a binary vector, indicating whether a motif is present or not in the peak sequence.

To evaluate syllable stereotypy, independent of sequence stereotypy, we used the peak of the spectral cross-correlation (Aronov et al., 2008), on a syllable-by-syllable basis.

As the FIE-HA+H3K27me3 FIE-HA+H3K27me3highest confidence FIE binding sites, we used these peakssequences in a MEME analysis.

When the true binding sites are not located near the center of some peaks and/or the peak sequences used in motif scan are not long enough to cover the actual motif, a motif-based approach would miss the site.

In the first step of PeakRegressor, we use MEME to find over-represented DNA motifs in the peak sequences.

The program uses one matrix representing the TF-binding motif and the peak sequences as input.

The peak sequences are analyzed for enrichment of transcription factor binding motifs using MEME-ChIP [ 15].

Locating and visualizing motifs Peak-motifs allows searching putative binding sites in the peak sequences.

Secondly, Schwarts et al. used the peak-calling software FindPeaks, whereas we used MACS, with only MACS also using input DNA sequence data for peak estimation [ 57– 57].

The residual water peak was suppressed using the WET sequence at the end of the relaxation delay (Smallcombe et al., 1995).