Sentence examples for using the parsimony bootstrap from inspiring English sources

To check for topological incongruence, the four DNA regions were first analysed individually, and support for recovered clades evaluated using the parsimony bootstrap [ 56] in PAUP v 4.0 [ 57].

Phylogenetic trees for SS1G_13371 family was generated using the parsimony method with 100 bootstrap replicates with the Extended Majority rule, as implemented in the protpars and consense programs of the Phylip 3.67 package [ 79]. S. sclerotiorum 1980 and B. cinerea b05.10 proteins were clustered based on sequence similarity by Markov clustering using the orthoMCL function in Biolayout 3D [ 80].

A single random addition of taxa was used for each replicate of the parsimony bootstrap.

For the PL and LF analyses in r8s, we used the 70% parsimony bootstrap consensus topology with branch lengths optimized under ML in PAUP*.

The parsimony bootstrap consensus trees were derived from a search consisting of 500 bootstrap replicates using a full heuristic search.

Support for clades was estimated using parsimony bootstrap analysis in PAUP* with 1,000 replicates, TBR branch swapping, simple taxon addition with one tree held at each step, and a maximum of 100 trees saved per replicate in order to decrease the time needed to run large bootstrap replicates.

Paup* 4b10 [ 30] was used for parsimony bootstrap analysis.

The consensus tree was constructed using the Maximum Parsimony method and 1000 bootstrap replicates with the complete AA precursor sequence were conducted.

Parsimony bootstrap (PB) analyses [ 52] with 1000 replicates were subsequently performed using the fast bootstrap option to evaluate the robustness of the MP trees.

Phylogenetic trees were developed using the maximum parsimony analysis in MEGA5 [ 17] with nonparametric bootstrapping using 1000 bootstrap replicates.

Robustness for the nodes in the minimum evolution, maximum parsimony, and maximum likelihood trees was evaluated using the bootstrap.