Sentence examples for using the pairwise software from inspiring English sources

The protein fragment was then aligned to the gene sequence from the ENSEMBL database using the PairWise software [ 65].

DNA alignments were used to estimate pairwise distances and to build phenetic trees, using the pairwise deletion of gaps option of the MEGA4.1 software [ 69].

Unrooted distance neighbor-joining trees showing the phylogeny of detoxification gene families were constructed using the pairwise deletion and p-distance functions of Mega 4.0 software.

We also used the software PHIPACK to test for recombination using the pairwise homoplasy index (Φw statistic) [ 74], because Rm is likely to be highly affected by homoplasy.

We tested this using the pairwise phase consistency (PPC) as a measure of spike-field coherence24.

We used the pairwise fixed reallocation randomization test included in the REST software to test the significance of the derived results.

For our experiments, we used the pairwise classification multiclass SVM with RBF kernel, available in the free software WEKA.

We first align scans pairwise with each other and use the pairwise alignments as constraints that the multiview step enforces while evenly diffusing the pairwise registration errors.

Analysis of the control cohort using the HelixTree™ software produced pairwise LD across the PTPN22 region (Fig. 2).

The amino acid (A; below the diagonal) and nucleotide sequences (N; above the diagonal) of IgV-like domain exons were compared pairwise using the ClustalW software (Weight Matrix BLOSOM).

The nucleotide and amino acid sequences of leader (L), IgV-like domain (N1, N2), IgC-like domain (A1, A2, B1, B2), transmembrane domain (TM) and combined cytoplasmic domain exons (Cyt) were compared pairwise using the ClustalW software (Weight Matrix BLOSOM).