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The final training data sets used for learning the classification/estimation models are created using the normalized data for the VDP and VH classes. .
The final training input data sets used for learning the classification/estimation models are created using the normalized data for all the classes considered.
The correlation matrix (340,000×340,000) was computed using the normalized data set.
Both analyses resulted in the highest percentages in the peaks called using the normalized data sets.
SAM analyses were performed using Flexarray software using the normalized data of the 45,000 probesets.
Using the normalized data, we revisited the preferential interactions originally described between subsets of discrete chromosomal features.
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For the comparison of Affymetrix and Agilent platforms, we used the normalized data from test site 2, which was normalized using PLIER [37].
As raw data are only available for some of the microarray datasets, we used the "normalized" data provided by submitters.
We used the normalized data set.
The GSE34153 dataset corresponds to the Agilent 4x44 K whole human genome array platform and we used the normalized data available in GEO series.
Using the normalized intensity data, Student's t-test was performed between the normal group (n = 30) and lung cancer patients group (n = 62).
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