Sentence examples for using the nj tree from inspiring English sources

These are highly similar to the results obtained using the NJ tree, suggesting that our conclusions may be robust to minor errors in the tree topology.

The results obtained using the NJ tree can also be used to distinguish Flos Lonicerae Japonicae successfully.

Ancestral reconstruction of feeding habits, oral tooth morphology and habitat depths were undertaken using the NJ tree from the AFLP dataset.

The NSLR i and SR i are computed using the NJ tree topology, using a routine from the Bio++ library (Dutheil et al., 2006) and the JTT matrix (Jones et al., 1992).

Neighbor-joining trees were derived from the trimmed alignments using scoredist distances as implemented in BioNJ [ 45] and maximum likelihood trees were obtained as implemented in PhyML using the NJ tree as a starting point [ 46].

The HA-based phylogenetic tree was constructed using the NJ method and the tree topology was further confirmed by using the Bayesian approach as implemented in Mr Bayes 3.2 [29].

A heuristic search with tree bisection-reconnection (TBR) branch swapping and 100 additional sequence replicates, saving a maximum of 100 trees per replicate, was used for the MP tree search, and a distance measure under the maximum likelihood settings was used for the NJ tree search.

The tree parameters were the same as those used for the NJ tree; in this case, the reliability of the inferred phylogeny was assessed by 500 bootstrap repetitions.

The pairwise deletion option was used in the NJ tree reconstruction and the accuracy of the tree topology was assessed by bootstrap analysis with 100 resampling replicates.

The pairwise deletion option was used in the NJ tree reconstruction and the accuracy of the tree topology was assessed by bootstrap analysis with 1,000 resampling replicates.

We determined the evolutionary distances (RST) among them, and constructed a phylogenetic tree using the NJ method (Saitou and Nei 1987), as shown in figure 1.