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Using the new microarray expression data for smokers, we can classify a sample into smoker with cancer or smoker without cancer based on CPAN and NPAN within the network-based biomarker.
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First, we use the new microarray data to determine levels of gene expression polymorphism among females of each population, as well as gene expression divergence between populations.
In order to determine how AsA synthesis is controlled in tomato fruits we combined introgression lines previously used for QTL mapping, and transcriptome analysis using the new CombiMatrix microarray platform.
Using the new generation of microarrays that accommodates > 120 Kbp of reference sequence, we have designed a multispecies tiling that includes the complete forward and reverse sequences of the mtDNA genomes (including Control Regions) of three mammal species in different orders, three ray-finned fish species in different subclasses, and one bird species.
A single gene (HS 3 Cj1135) had a significantly lower absence rate among enteritis-control strains (Table 1). 1 Due to the smaller sample size of enteritis-control strains assayed using the newer version of our microarray, 8 enteritis-control strains from unrelated strain collections were randomly selected and included in this group.
However, workflow for the detection of alternative splicing events using this new microarray technology has still to be investigated in order to define the importance of each analysis step and its strength and weakness.
The new microarray analyses used cells grown under two different paired conditions and each experiment was performed in duplicate with independent cultures.
We used the new 20K Atlantic cod microarray to investigate how a water temperature change which, simulates that seen in Newfoundland during the spring-summer (i.e. from 10°C to 16°C, 1°C increase every 5 days) impacted the cod spleen transcriptome response to the intraperitoneal injection of a viral mimic (polyriboinosinic polyribocytidylic acid, pIC).
Use the new number.
Use the new design.
The high coverage and specificity (detection of three nucleotide differences) of the new microarrays used has highlighted the macroscopic genomic differences between two S. lividans strains and S. coelicolor.
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