Sentence examples for using the moe modeling from inspiring English sources

The loop sequence C30UGGGA35 was exchanged for a UCCG tetraloop obtained from PDB structure 2KOC by fitting the respective 3′- and 5′-ends and performing a local minimization for the two affected backbone phosphate groups using the MOE modeling package.

The yeast homology model was built using the MOE software (Chemical Computing Group).

In the Schmuker and Schneider (2007) approach, a set of 184 physicochemical descriptors is calculated using the MOE software (Chemical Computing Group).

Compounds that scored well with STAT1 were eliminated, and the remaining ones were clustered using the MOE (Molecular Operating Environment) program and visually examined using the UCSF Chimera ViewDock function.

To determine the minimum age at which production would be possible: 1. Use the appropriate MOE model (Leyland, Lusitanica or Macrocarpa) to determine the earliest cambial age, A, at which the majority of trees (i.e. lower 95%% model prediction interval) would achieve Y GPa.   2.

Use the appropriate MOE model (Leyland, Lusitanica or Macrocarpa) to determine the earliest cambial age, A, at which the majority of trees (i.e. lower 95%% model prediction interval) would achieve Y GPa.

Differences between measured values (ym) and predictions (yp) of ρg and MOE using the five models were expressed at the mean tree level (by averaging across logs) and log level.

The models of the NTD and CTD thus obtained were then energy minimized using the Molecular Operating Environment (MOE) utility, version MOE2006.08, using the MMFF94x forcefield and were then stitched together to generate the modeled mycobacterial CoaE by the Coot software [20], [21].

We combined a ligand-based pharmacophore design with a structure-based protein/ligand docking using the software MOE in order to evaluate the underlying structure/activity relationship.

Secondly, we study the properties of a peptide design problem using the software MOE.

The models were relaxed using a quick minimization routine with Amber force field and molecular surfaces were generated using the Molecular Operating Environment (MOE) (Chemical Computing Group, Montreal, Canada).