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In this study, rather than using the ML algorithm, we shall apply the method of least squares (LS) for frequency tracking utilizing repeated OFDM training blocks.
The estimation of ancestral mitogenomic character states and the presence/absence of DUI, based on the majority-rule codon-based BI tree, was carried out using the ML algorithm in Mesquite (v.2.6; [ 106]).
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This algorithm first infers a binary tree using the HAC-ML algorithm (Park and Bader, 2011).
We decided to use the SNV algorithm as our SNR estimation algorithm since it outperforms the ML algorithm with respect to mean square error (MSE).
To estimate the age since gene duplication, the synonymous substitution rate (Ks) between two duplicates genes was computed using a ML algorithm using the program Codeml in PAML (Yang 1997).
The MRCA expression pattern can be inferred from other members in a gene family using a ML algorithm in a probabilistic framework, and it can be used to approximate the ancestral state of expression pattern (Gu 2004; Gu et al. 2005; Oakley et al. 2006; Fisher 2008; Zou et al. 2009; Liu and Adams 2010).
Phylogenetic analyses were performed using the maximum likelihood (ML) algorithm available in the computer program PAUP* 4.0 b10 with JC69 model [26].
Locus order within the LOD grouping was generated for each LG using the maximum likelihood (ML) algorithm with default parameters.
Phylogenetic analysis was performed using the maximum likelihood (ML) algorithm with the general time reversal (GTR + G) model using MEGA version 5.1 (Tamura et al. 2011).
A phylogenetic tree of haplotypes sequences was constructed using the maximum likelihood (ML) algorithm in MEGA5, with 1000 bootstrap replicates to gauge support, and a 60% cut off was used in the analysis.
Using the machine learning (ML) algorithm random forests (RF; [ 39]), predictors of black bear activity included major intertidal diet items (Pacific herring egg and amphipod mass), gray wolf activity (measure of risk), day of the year, year, and location.
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