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The genomes of phages 812 and 812h1 were determined using the MiSEQ system (Illumina, USA) according to Botka et al.50.50
Purified libraries were processed for cluster generation and sequencing using the MiSeq system.
The mRNAs of Rt24.2 and Rt2472 were sequenced in 250-bp cycles using the MiSeq System with SBS technology (Illumina).
Validated pooled cDNA libraries were prepared for sequencing following the Illumina protocol and sequenced using the MiSeq system on a 300-cycle MiSeq sequencing cartridge (Illumina).
The draft genome sequence of Moraxella nonliquefaciens DSM 6327T was determined through paired-end shotgun sequencing performed by using the MiSeq system (Illumina) with 300× coverage.
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We used the MiSeq system (Illumina) for paired end sequencing with a v2 150-bp kit.
Indexed ND1/ND2 and common deletion fragments were pooled for all patients and sequenced using the MiSeq Personal Sequencing System (Illumina) (see Methods SI).
The pools were sequenced on an Illumina MiSeq System using the MiSeq Reagent Kit v2 and a 500-cycle 14-tile flow cell.
Library DNA concentration was measured using the QuantIT kit (Molecular Probes) and paired-end sequenced (2 × 250 bp with an approximate average fragment size of 300 bp) on an Illumina MiSeq system using the MiSeq 500 cycles reagent kit v2 (Illumina Inc).
In second-level PCRs, barcode primers unique for individual clones were used and PCR products were subjected to deep sequencing using the MiSeq (Illumina) benchtop sequencing system.
Paired-end sequencing was performed using the MiSeq Reagent Kit v3 and MiSeq Sequencing Systems (Illumina).
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