Sentence examples for using the mcl algorithm from inspiring English sources

The network was clustered into groups of genes sharing similar profiles using the MCL algorithm with an empirical MCL inflation value (1.8) and a global graph for each network was created showing the MCL clusters.

The whole-proteome clustering analysis for 9 Magnaporthales spp. and 4 closely related species was performed using the MCL algorithm (http://micans.org/mcl/ 65.org/mcl/ 65

Gene families were assembled by the Ensembl project [26] (version 41 – October 2006; www.ensembl.org) using the MCL algorithm.

This can be attributed to the nature of the IMG ortholog clustering that divides proteins with bidirectional best hits using the MCL algorithm, thus resulting in many more clusters of finer granularity.

The network was clustered into 597 putative functional modules using the MCL algorithm [ 35].

Transcripts across all species were pooled and clustered into groups based on similarity using the MCL algorithm [ 54, 55].

The line graph generation approach [ 9] transforms the network of proteins connected by interactions into a network of connected interactions and then uses the MCL algorithm to cluster the interaction network.

In addition to improved execution pipeline on Sun Grid Engine clusters, this version of OrthologID used the MCL algorithm (Enright et al. 2002; Van Dongen 2008) for improved clustering and included automated extraction of orthologs from gene trees into a partitioned matrix in a single package.

We used the MCL-clustering algorithm with inflation parameter set to 20 to capture also small clusters.

The MCL algorithm uses both the expansion and inflation operators iteratively to find out a steady state where the each value in a single column of the resulting matrix remains the constant.

Using the Tribe-MCL algorithm, 3522 genes (32% of the predicted AcNc2 gene repertoire) were clustered into 1020 gene families.