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GenSSI is cross-platform (using the MATLAB computing environment, available in most operating systems) and is easy to use, not requiring high-level programming or advanced mathematical skills from users.
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Finally, multiple threads executed in parallel using the Matlab "Parallel computing toolbox," enhancing speed of computation.
The code was originally written for batch processing on clusters using the Matlab Distributed Compute Engine (DCE) and associated toolbox; hence there are several levels of wrapping around the main learning code file - STDE_Shen_batch.m - to support this.
The p-value for each window was then estimated using the Matlab function nbincdf which computes the distribution of the cumulative negative binomial distribution.
and Fig.3.14 shows its frequency response, computed using the matlab utility myfreqz listed in Fig.7.1.
Artificial neural networks (ANN) were computed using the Matlab software (Natick, MA).
The analyses were performed using the MATLAB (www.mathworks.com) platform.
Videos were then automatically analysed using the Matlab application CellGeo52.
The Matlab Expression actor can access Matlab methods to process matrices and plot data using the Matlab plotter.
The MEME framework is implemented using Matlab
We use the Matlab routine fmincon to compute the optimal SURE SigShrink parameters.
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