Sentence examples for using the mapping information from inspiring English sources
This BAC was identified by screening high density filters containing the NLE genomic BAC library (CHORI-271) using the mapping information obtained by array-painting [14].
Using the mapping information from these NMR studies, we addressed the feasibility of modulating hippuristanol sensitivity among eIF4A family members (Fig. S1).
Using the mapping information from Mayerhofer et al. [ 10] small blocks were found for B N2, N6, N12, and N16 at the top of At Ch5.
Using the mapping information from Parkin et al. [ 11], five conserved blocks were identified between At Ch1 and linkage groups N18, N13, N19, N15 and N16.
Using the mapping information from Parkin et al. [ 11] two inverted blocks for N12 and N14 were identified, along with a 6 Mb block for N13.
The fungal protein entries in FunSecKB are linked to the UniProtKB using the mapping information generated in UniProtKB (ftp://ftp.uniprot.org/pub/databases/uniprot/current release/knowledgebase/idmapping/) (33).
We use the map information to order and orient the sequence scaffolds ( = arranged contiguous DNA sequences with interior gaps of known size) of the N. vitripennis assembly 1.0 and to estimate recombination rates along all five chromosomes of Nasonia.
Read depth of genomic coverage was measured in a number of ways using the mapped reads and information provided by the paired-end sequencing process, which sequences both ends of clones from a library with a known average insert size.
Using the various mapping information it is possible to identify potential errors in the assembly of the current bovine genome sequence which should be investigated further to aid the improvement of the next sequence build.
Results from the classical and LOX analysis as well as the consensus analysis are given in Additional file 2. For the analysis of reads that mapped to different genomic regions (e.g., exons, introns, intergenic regions), reads were counted based on the SAM files with the mapping information using custom-made Perl scripts as described above.
The quality of maps varies broadly among populations, marker sets, and software used, necessitating efforts to integrate the mapping information and generate consensus maps.
