As suggested by Salari et al. (2013), we used the local version of remuRNA with a window size of 150 nt to compute the mRNA local structural entropy caused by SNPs or random mutations, using the default settings.
We subsequently used the local version of RepeatMasker (Smit & Green, Repeat Masker at http://ftp.genome.Washington.edu/RM/RepeatMasker.html) containing a specific library comprising all CHR-1 and CHR-2 subfamily consensus sequences to scan for novel SINEs.
With regards to language preference, 18 (78.3%) preferred using the local language (Tigrinya) version of the forms to English.
The global version of Pat was used since the local version does not support the time-dependent effects.
Where possible, scaffold gaps were filled, and contigs were extended, using the local reassembly tool Anchor (version 0.2.7, http://www.bcgsc.ca/platform/bioinfo/software/anchor/releases/0.2.7) (Docking et al., in preparation).
Cui et al. [11] improve the unbounded size version using the local search strategy, but leave the problem with bounded size unsolved.
Domain architecture analysis of all referenced or predicted DANGER protein sequences was performed by using the executable local version of the rps-BLAST program (BLAST suite version: 2.2.14) and its accompanied CDD database.
For each published multivariate function, logistic regression was used to estimate the local version of the function.
Here the browser displays search results for "Wikipedia" — using Google as the search engine (the local version of the browser uses Yandex's own search by default).
