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The local dependence assumption was also investigated on test-one, test-two and test-three data using the LD x 2 test.
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Linkage disequilibrium (LD) calculations between polymorphisms were carried out using the LD option implemented in TASSEL v.2.1 [ 30].
LD between the two SNPs was measured using the pairwise LD measures D' and r2 and LD blocks were subsequently defined using the Gabriel et al algorithm [19].
The centre is offering 50% off ski and snowboard taster sessions when you make a booking using the code CCBC LD 001.
Pairwise LD was estimated using the correlation coefficient (r2) and the LD map was visualized using the snp.plotter R package [55] and was used to identify LD blocks within gene regions.
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Use the formula Ta=Ts x(D1/D2).
Pairwise linkage disequilibrium (LD) was quantified using the absolute value of Lewontin's D' and r2 and LD plots were generated using Haploview version 4.1 [37].
Firstly, the LD block was analyzed using the software "Haploview v4.2 Barretttt et al. 2005).
We called genotypes for 1713 SNPs from the panel used in the LD analysis.
Using the optical feedback stabilized 5 mW LD as illuminant, the optical driving distance is 100 m.
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