Sentence examples for using the java application from inspiring English sources

The validation study has been performed using the java application GeneNetWeaver (GNW) http://gnw.sourceforge.net[ 19].

Gene set enrichment analysis (GSEA) was performed using the JAVA application from the Broad Institute v2.0 [ 47].

Lipid structures were generated using the Java application SMILIB v2.0 (Schüller et al., 2007) which combines SMILES (Weininger, 1988) representations of chemical substructures.

Randomisation of sites (sampling without replacement) was performed using the Java application SiteSampler v1.1 [ 56] Support for the different partitioning schemes was examined by assessing Bayes factors, calculated using a harmonic-mean estimator in the software Tracer v1.6 [ 57, 58].

Gene-set enrichments in FACS-sorted mammary epithelial cell subpopulations were determined by using the JAVA application from the Broad Institute v2.0 [ 28, 29] and gene sets v2.5 and v3.0, as well as custom gene sets (see Additional file 3).

It comes equipped with data integration modules that load data from common biological formats (e.g. GFF3, FASTA, OBO, BioPAX, GAF, PSI and chado see Supplementary Material for a full list), while custom sources can be added by writing data parsers using the Java application programming interface (API) or by creating XML files in the appropriate format, for which a Perl API exists.

To train the CRF, we used the Java Application Programming Interface (API) provided by ABNER [ 21].

Users may re-enable automatic execution of Java applets using the Java Preferences application.

In addition, Apple explained in its support document for the Java update, "Users may re-enable automatic execution of Java applets using the Java Preferences application.

A. System implementation: The proposed system is implemented by using the Java enterprise edition web application with tomcat server.

To assign exposure, we developed a custom Java (Sun Microsystems, Santa Clara, CA) application using the ArcSDE Java Application Program Interface version 9.0 (ESRI, Redlands, CA) and the GeoTools Java GIS Toolkit, version 2.0 (open source, http://geotools.codehaus.org/).org/