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We also tested linear SVM using the implementation in the LIBLINEAR software [29], which does not support parallel execution.
To accomplish it, we have harnessed the algorithm by Grosse-Kunstleve and Adams [50], using the implementation in spglib [51].
To accomplish it, we have harnessed the algorithm by Grosse-Kunstleve and Adams [50], using the implementation in spglib [51]. 3 Addition of structure properties (total energies, residual forces etc).
In short, (i) we kept the residuals of a mixed model that removed the effects of the family structure using the implementation in GenAbel R package.
As mentioned in the introduction, PCF is conceptually similar to the CGHseg method described by Picard et al.[ 6], and we also examined the computational performance of this method using the implementation in the R package cghseg.
Although there are many freely available and commercial implementations of the multiplicative update algorithm (Lee and Seung, 1999), the results reported here were deriving mostly using the implementation in Brunet et al.
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SIFT, SURF, RGBSIFT, STIP, and MFCC features were extracted using the implementations in [22, 24, 36, 40], and [41], respectively.
As before we used the implementation in R Language provided by [10].
We used linear SVM, which has previously shown good results for QSAR modeling [33, 34], and used the implementation in Spark MLlib with L-BFGS for optimization because it works well with imbalanced datasets.
To test the global-median normalization strategy, we used the implementation in the R-package CGHcall version 1.2.0 [ 14].
We again used the implementation in glmnet and performed a grid search to find the combination of α and λEN, which yielded the lowest mean squared error in the training population.
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