Sentence examples for using the hmmer program from inspiring English sources

Exact(11)

These alignments were used to generate a hidden Markov model using the HMMER program [15].

A HMM profile was created using the HMMER program for all the MoLFunCs (including the authority protein) and used as query to search the genomes of species corresponding to the MoLFunCs.

Copies of each locus were extracted from the genomes using the methods above were aligned using the HMMER program hmmalign.

Moreover, the CBS domain protein gene was searched for conserved domains using the HMMer program [ 41] and the Pfam_fs hidden markov model (HMM) database.

For eight clusters that comprise ≥30 gene members, we performed motif search/extraction analyses by using the HMMER program against the Pfam motif database.

A query may consist of a single sequence, a multiple sequence alignment, or a profile HMM built using the HMMER program hmmbuild.

Show more...

Similar(49)

To additionally verify that the separation of the subfamilies was correct, we used the HMMer program version 2.3.2 to create subgroup-specific HMMs and tested each of them against members of the other subgroups (see Additional file 1 and Additional file 2b).

The HMMs were trained on this alignment using the HMMer programme's (Eddy, 1998) HMMBuild.

Domains within the sequences were identified by searching against the Pfam database [69] using the HMMER v3 program [70].

We then searched all the HMM profiles against the sequences annotated with a valid four-digit EC number available in Swiss-Prot release 56.7 using the HMMER hmmsearch program [ 30]).

The HMM profile of the Pectinesterase proteins (PF01095) was downloaded from the Pfam database (http://pfam.sanger.ac.uk), and used as a query to search the translated Apple genome (http://www.rosaceae.org/) using the HMMER 3.0 program with default parameters (hmmer.org).org

Show more...

Ludwig, your English writing platform

Write better and faster with AI suggestions while staying true to your unique style.

Student

Used by millions of students, scientific researchers, professional translators and editors from all over the world!

MitStanfordHarvardAustralian Nationa UniversityNanyangOxford

Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak quote

Justyna Jupowicz-Kozak

CEO of Professional Science Editing for Scientists @ prosciediting.com

Get started for free

Unlock your writing potential with Ludwig

Letters

Most frequent sentences: