Sentence examples for using the heuristic tree from inspiring English sources

Parsimony analyses were conducted with PAUP v4.0b10 [ 75] using the heuristic tree bisection and reconnection branch-swapping (TBR) algorithm with 100 random addition replicates.

Confidence in the phylogenetic grouping was assessed by the non parametric bootstrap method [87], [88] with 1000 pseudoreplicates undertaken using the heuristic search option, tree bisection reconnection branch swapping (TBR) and 10 random taxon addition replicates.

For the main phylogenetic analysis, corrected distance was performed in PAUP*v4 using the heuristic search with tree-bisection-and-reconnection branch swapping.

These parameter estimates were then employed in the ML tree search, using the heuristic search options and the MP tree as a starting topology for branch-swapping by TBR [for a similar approach, see [ 45]].

All MP analyses were unweighted and performed with PAUP* 4.0b10 [ 100] using the heuristic search algorithm with tree bisection reconnection branch swapping and 10 random stepwise additions.

Distance trees were created using the heuristic distance search for optimal trees by PAUP and the maximum likelihood method by PHYML.

The most parsimonious trees were generated using the heuristic search algorithm, equal weighted characters, gaps treated as missing data, with tree bisection-reconnection (TBR) branch swapping, 1000 random additions of the sampled taxa, and 10 trees saved per replicate and a strict consensus tree was computed.

The ML tree was implemented using the heuristic search option with TBR branch swapping.

The last two trees were obtained using the heuristic search algorithm.

The MP tree [ 68] was obtained using the heuristic search method.

Using constrained searches in TNT to find the most parsimonious trees that depict selected taxa in alternative positions (using the force command before the heuristic tree searches), we found that the three most feebly supported taxa within Lithostrotia are the fragmentary Early Cretaceous Diamantinasaurus, the latest Cretaceous Isisaurus, and Nemegtosaurus (which lacks postcranial elements).