Sentence examples for using the hapmap database from inspiring English sources

The SNPs were selected to extract the most genetic information based on CHB haplotype data using the HAPMAP database (Hapmap Data Rel 27 Phase II+III, Feb09) [37].

CANGES compensates the tag-SNP designs by using the HapMap database and producing a comprehensive list of SNPs in region pinpointed by the tag-SNPs.

The SNP module searches also allele frequencies and tag-SNPs for each annotated SNP, using the HapMap database version 3, draft 1 [10].

For all probes present on the Illumina HT12 array, a systematic search for sequence polymorphisms was undertaken, using the HapMap database as reference (Release 27; Phase II+III, Feb09, on NCBI B36 assembly and dbSNP b126).

Haplotype-tagging SNPs covering the variation in CRY2 were selected using the HapMap database [68], applying the cut-off values of 0.8 for r2 and of 0.1 for the minor allele frequency (MAF).

LSBL in HapMap was calculated using the HapMap database that considers all African, European and Asian populations together.

Chr = chromosome A summary of the interpopulation differences using the HapMap databases shows that a total of only 30 of the interpopulation marker comparisons had very large frequency differences or 100% informative for ancestry (delta = 1) between the 2 ancestral groups (Table 2).

First, we used the HapMap database [ 18] to assess the true positive (TP) and false positive (FP) rates when haplotype estimation has introduced uncertainty to the haplotype data.

The distribution and density of SNPs across the genome of African and European populations were extensively investigated by using the HapMap, Affymetrix, and Illumina SNP databases.

We aligned available DNA sequencing data for K562 and HeLa-S3 to the reference genome (hg18) and by using SNPs from the HapMap database and the aligned sequence reads, we calculated the most likely genotype for each cell type for the SNPs in peak regions (see Methods).

Twenty-eight SNPs were selected by a tagging approach [23] using the Caucasian HapMap database (www.hapmap.org) based on a pairwise r2 of ≥0.8 among all common SNPs with minor allele frequency of ≥0.05.