Sentence examples for using the graphical genotyping from inspiring English sources

Using simple sequence repeat (SSR) markers spanned across the genome, the effects of foreground selection on linkage drag and genome background content were estimated using the graphical genotyping software GGT 2.0 (Berloo 2007) based on a specific F2 population type calculation.

We estimated genome-wide linkage disequilibrium (LD) using the graphical genotyping program GTT 2.0 (Van Berloo 2008).

Based on their graphical genotypes, obtained using the Graphical GenoTypes (GGT) software (Van Berloo 1999), the S42ILs where ordered according to the chromosomal positions of their overlapping target introgressions.

For quality control (QC) of the genotyping, we used a call rate of 0.99 for cases and controls; all the samples with 0.99 call rate were analyzed by two independent researchers who scored genotype results using the graphical view (SD 2.1.1, Applied Biosystems), and all differences were resolved by discussions between the independent researchers and by rerunning the samples if necessary.

The top row in Figure 5 shows the iTools graphical traversal and keyword search (key = blast) using the graphical interface and the tabular resource view panel.

The colors used in the graphical genotype representation for each cultivar were based on a comparison with the genotypes of Koshihikari and Nipponbare.

The lengths of substituted chromosome segments in ABL were estimated based on the graphical genotyping procedure (Suh et al.2009b; Xi et al.2006).2006

Additional SSR and PCR assays confirmed the graphical genotyping results for six out of eight LGs.

Although these 'gene-trait relationships' need extensive analyses using other NU varieties or a rice diversity panel, the graphical genotype we have presented can be a starting point and also guides functional validation by molecular genetics.

Finally, the graphical genotype map was drawn based on the filtered SNP genotype data using the web tool PhenoGram (http://visualization.ritchielab.psu.edu/phenograms/plot).ritchielab.psu.edu/phenograms/plot

The table on the right of the graphical genotypes shows the mean values of 2 traits for each genotype.