Sentence examples similar to using the gostat web-server from inspiring English sources

Statistical support was computed using the GoStat web server (Beissbarth and Speed 2004), employing a stringent cutoff of P ≤ 0.001 and Benjamini correction for false positive detection.

Gene Ontology term enrichment in up and down regulated gene sets were assessed using the GOstat web tool [37].

Functional annotation of differentially expressed genes was performed using the DAVID web-server [ 69] and GOstat [ 70]..For GOStat analysis, all significantly down-regulated transcripts with at least one associated GO description (39), previously obtained with Blast2GO, were compared against a background of 4,692 GO-annotated DLPD entries, using the GOStat program with default settings.

The distance matrices were converted into heatmaps using the matrix2png web-server (Pavlidis et al. 2003).

Multiple sequence alignments (MSA) for the highly diverged AQPs were generated using the PROMALS3D web-server.

Nucleotide sequences were translated into protein sequences using the TRANSLATE web-server [ 65].

Homology searches against GenBank were done using the BLAST Web-server at NCBI [ 32].

The disulfide bond patterns were verified using the web-server BRIDGED [ 79, 80].

The enriched GO biological processes were clustered and visualized using the web-server REVIGO (http://revigo.irb.hr).

We calculated GO term enrichments using the GOstats package [46].

Analysis was carried out using the GoStats package, Bioconductor.