Sentence examples for using the gostat program from inspiring English sources

The differentially expressed genes were analyzed using the GOstat program (available at www.gostat.wehi.edu.au), which identifies enriched functional groups of genes based on Gene-Ontology (GO) annotations.

Searching for over-represented terms in the automatically annotated GeneDB Gene Ontology fields was performed using the GOstat program [58], with a p-value cutoff of 0.1 and correction for multiple testing (False Discovery Rate, Benjamini).

A statistical analysis using the GOstat program [ 18] confirmed the enrichment of Chinese chestnut transcritpome in these functional categories (p-value < 0.01).

Enrichment of a gene ontology annotation in a dataset of differentially expressed genes compared to the genes present on the array was determined using the GOStat program [ 62].

Using the GOStat program for gene ontology analysis (, [ 31]), the most overrepresented GO category for the green module was in response to temperature stimulus (GO 0009408, p = 4.4 × 10-22).

We also identified genes associated with islands of early replicating sequences and found an enrichment in WNT genes and DNA glycosylases and, using the GOstat program, an overrepresentation of genes involved in apoptosis.

We also used the GOstat program [33] to calculate enrichment (using an FDR multiple testing correction) and results were quite similar; we report only FuncAssociate enrichment values because they are slightly more statistically conservative.

We also used the GOstat program to find GO groups enriched in the subnetworks of T4 cells.

To address these possibilities we used the GOStat program [ 26] to determine if any gene ontology subgroup was overrepresented in our sample of nuclear enriched genes.

A complete list of genes associated with library islands can be found in Additional file 3. To evaluate further the potential function of genes that were associated with the islands we used the GOstat program [ 48, 49].

Gene Ontology term enrichment in up and down regulated gene sets were assessed using the GOstat web tool [37].