Sentence examples for using the genomic sequences from inspiring English sources

Thus, only the frequency matrices of 9 motifs were used to identify all single occurrences of these motifs in the promoter regions of the subfamily A members and all protein-coding genes using the genomic sequences of Arabidopsis (genome release 7.0, January 2007) [ 60] and rice (release 4.0, January 2006) [ 47] (Table 5).

We searched for ABREs and CE3s in the promoter regions of protein-coding genes from A. thaliana and O. sativa using the genomic sequences of Arabidopsis (genome release 5.0, January 2004) and rice (release 4.0, January 2006) downloaded from The Institute for Genomic Research TIGRR) [ 26].

Nevertheless, the protein-level homology that exists between related bacteria makes it possible to extract biological information from the proteome of an organism or microbial community by using the genomic sequences of a near neighbor organism.

The probes were further filtered using the genomic sequences of the parental strains S288c and 59A.

For those LSGs with no significant CDS hit to a non-Brassicaceae CDS, BLASTN searches were performed using the genomic sequences (i.e. pseudo-chromosomes and/or scaffold sequences).

Intronic oligonucleotide primer pairs flanking the coding fragments were designed for both the genes using program primer 3 using the genomic sequences of SLC15A1 and GPC5 gene respectively.

By using the genomic sequence of several related genomes, it is possible to infer how conserved a potential binding sites is, and thus to have a higher confidence in the conserved predicted sites versus the non-conserved sites [3].

Using the genomic sequence of CiLV-C, specific primers and probe were designed and synthesized to amplify a 73 nt amplicon from the movement protein (MP) gene.

Moreover, it has been found that budding yeast nucleosome occupancies measured in vivo by deep sequencing are accurately predictable using the genomic sequence only, indicating that the DNA sequence plays a major role in positioning nucleosomes in vivo [23].

In this study, we employed a systematic peptide identification strategy in which spectra derived from one organism were searched against the genome sequences of progressively more genetically distant neighbor organisms to measure the extent to which proteomic information could be obtained about one species when using the genomic sequence of another.

The fraction of each of four deoxyribonucleotide moieties was determined using the genomic sequence of the bacterium.