Sentence examples for using the genomic segmentation from inspiring English sources

Detection of CN gains and deletions was performed using the Genomic Segmentation algorithm available in PARTEK Genomics Suite to obtain the different CN state partitions.

CNAs were identified using the genomic segmentation algorithm in PGS.

The CN profile was analyzed using the genomic segmentation algorithm of PARTEK Genomic Suite 6.5 (PARTEK Inc., St . Louis USA).

For a new unknown genomic sequence, the optimal threshold s0 of segmentation strength or significance level can be computed using the genomic sequence of the same or the closest organism.

The genomic DNA was purified from biomass using the Genomic DNA Purification Kit (Fermentas).

This analysis was performed as per the manufacturer's instructions using default settings on the genomic segmentation algorithm, which included a minimum marker-distance of 50, P-value threshold of 0.001, and signal to noise ratio of 0.3.

The genomic segmentation algorithm used to detect amplifications and deletions showed a total of 8409 change calls in the group of progressive leukoplakia and OSCCs, and 2170 change calls in non-progressive samples.

The genomic segmentation algorithm was used to detect breakpoint regions and estimate copy number levels with stringent parameters (P < 0.0001, >20 markers, signal/noise: 0.45).

This algorithm is similar to HMM segmentation but instead of searching for regions from a specified list of states, the Genomic Segmentation Algorithm finds breakpoints in the data.

The average value of all copy number probe intensity calls across the genome was assigned as copy number state 2. Segmentation analysis was performed on copy number probe intensity calls using Partek's genomic segmentation algorithm, which determines breakpoints in the data rather than calculating a predefined copy number state.

The genomic profiles were then segmented using the circular binary segmentation algorithm (DNAcopy package, Bioconductor) [ 14] into the LRR and BAF data separately, as previously described [ 13, 15].