Sentence examples for using the genomic nucleotide from inspiring English sources

Remains of insertion sequences were identified by searching against the ISfinder [23] database using the genomic nucleotide sequence as query.

Using the Genomic Short-Read Nucleotide Alignment Program (GSNAP) [ 12], 83% or more of the reads from each sample mapped back to the reference genome after alignment.

A zero'th order Markov chain (ZOM) approximates genomic oligonucleotide frequencies using the corresponding genomic nucleotide frequencies (see materials and methods for more details).

We used the Genomic Short-read Nucleotide Alignment Program (GSNAP) (Wu and Nacu 2010) to map 1,140,550,335 reads from G. raimondii (D5), and 4,070,680,434 reads from G. arboreum (A2) to the G. raimondii reference genome (Paterson et al. 2012), accepting only unique best hits and allowing for novel splice sites (Table 1).

The average genomic GC content was used as the characteristic of the genomic nucleotide composition.

Therefore we address the question if the genomic nucleotide sequence and the refined PWM could be used to predict ChIP-seq tag counts.

To determine the nucleotide sequence of the 16S rRNA gene, genomic DNA was extracted from 5-day cultured cells using the QIAGEN® Genomic DNA Kit.

The HIS3 cassette was obtained from CEN.PK113-7D CEN.PK113-7DusingenomicucleotiDNA HIS3_O_f, HIS3_O_r.

After washing, the probes underwent single-base extension using the captured genomic DNA as templates and incorporating 2, 4-dinitrophenyl or biotin-labeled nucleotides to identify the genotypes.

Preliminary blast searches using the nucleotide region spanning from the gene O163_11495 to the gene O163_11565 revealed 97%% identity to a genomic region from Thermoanaerobacter wiegelii.

The nucleotide changes were determined by polymerase chain reaction-restriction fragments length polymorphism (PCR-RFLP) analysis using the isolated genomic DNA as a template.