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Exon-intron organization was determined using the genome browser in RAP-DB (http://rapdb.dna.affrc.go.jp/).jp/
A BAC containing the human NANOG gene plus >10 kb of flanking sequences was identified using the genome browser at http://genome.ucsc.edu.ucsc.edu
Using the Genome Browser allows for the graphical analysis of the associated data.
Microsynteny in flanking regions of segmental duplicates was verified using the Genome Browser.
Genetic map positions were estimated by identifying the nearest flanking SSR markers using the genome browser (http://www.soybase.org).org
Genes can also be located using the genome browser, which is linked to and from the gene information page.
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In these cases, students use the genome browser and other online tools to collect data and analyze their projects.
All file access operations have been modified to use the Genome Browser HTTP download server, using the local hard disk as a cache.
We used the Genome Browser tools developed by the Generic Model Organism Database Project, http://gmod.org to visualize the genome of B. rapa [ 10].
Users can also use the genome browser tool to navigate through the chromosome and access any gene or genetic feature displayed.
In order to study the putative physical linkages between some of the cnidarian bHLH genes, we used the genome browser available on the web site of the DOE Joint genome institute [ 59].
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