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Aligned allergen gene CDS were used for analysis of gene conversion using the GENECONV software as described in Sawyer (1989).
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The sequences were analyzed for gene conversion by using the Geneconv program with default parameters [ 41].
Each marker was tested for recombination events using the GENECONV [ 49], MaxChi [ 50], and RDP methods [ 51].
To further establish whether gene conversion has occurred, and identify the boundaries for each species, we made an analysis using the Geneconv program [ 12] (Table 1).
Using the GENECONV program, we also detected that tracts of gene conversions between L and M opsin genes occurred mostly within the intron regions.
Putative genetic recombination events occurring in Xanthomonas genomes were examined by using the software geneconv [ 86] and PhiPack [ 87].
To determine whether gene conversion played a similar prominent role in the evolution of vertebrate Ugt1 clusters, we used the Geneconv program [ 41] to search for gene conversion events among Ugt1 variable exons.
Detection of most likely borders of gene conversion events and statistics were done using Geneconv software [ 12].
Data were analyzed using the instrument software.
Analysis was done using the manufacturer software.
Data were analyzed using the CellQuestTM software.
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