Sentence examples for using the genbank database from inspiring English sources

In this study, eight coding sequences (CDS) of AP2 gene were selected from different plant species using the GenBank database.

Primers to amply the 16 S rRNA from several bacteria of the Firmicutes phylum (Listeria monocytogenes, Staphylococcus epidermidis, S. aureus, Enterococcus faecalis, Lactobacillus casei, Streptococcus pyogenes, Clostridium perfringens and Bacillus cereus) were designed using the Genbank database and were aligned using ClustalW.

Web-based similarity searches using the GenBank database were used to determine the homologous degrees of zlaI and zlbI protein sequences to those of other AHL synthases.

ODN sequences were subjected to a BLAST search on the National Center for Biotechnology Information BLAST server using the Genbank database.

Sequencing results were analyzed using the BioEdit sequence alignment editor (Ibis Biosciences); primer sequences were removed and nucleotide similarity comparisons were made using the GenBank database.

The nucleotide sequences were identified with a BLAST search (http://www.ncbi.nlm.nih.gov/BLAST/) using the GenBank database.

As a source of mt-12S rRNA variations we used the GenBank database.

Analysis of results was carried out using the GenBank nucleotide database and BLAST algorithm [39].

Of the remaining 10 SNPs, five were verified electronically using the GenBank SNP database (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi db = Snp).

DNA fragments from the bands were sequenced and each OTU sequence and each sequence from the DGGE bands were assigned to taxonomic groups by BLAST using the GenBank nucleotide database as described above.

Primers for qPCR were designed by using the GenBank nucleotide database and the online software available from Genscript (www.Genscript.com).