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The flutter stability boundaries are determined by using the frequency coalescence criterion with the quasi-static approximation and Movchan-Krumhaar's criterion with the piston theory aerodynamics.
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Genotype simulations were conducted using the Markovian Coalescence Simulator (MaCS) [ 11] to simulate 1,000 base haplotypes.
Finally, we estimated historical effective population sizes, migration rates and splitting time between the VID and RIN populations using the Bayesian, coalescence and MCMC based method IMa [ 62].
First, we simulated 2N sequences, corresponding to N diploid individuals, using the coalescence method.
I first present an informal description of the method, followed by an explicit description of implementation using the deep coalescences criterion.
Using the 406 MHz frequency?
To simulate the data in the base population, we used the coalescence theory.
We therefore used the coalescence-based maximum-likelihood method of Galtier, Depaulis, and Barton [44].
Finally, when possible we also used the coalescence-based maximum-likelihood method of Galtier, Depaulis, and Barton [44].
We used the "minimize deep coalescences" method [ 9] as implemented in Mesquite 2.01 [ 10] to recover the population tree that minimizes the number of deep coalescences in the gene tree [ 11].
Using the evolutionary mutation rate, we obtained coalescence estimates that were three times older than those calculated from the pedigree rate.
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