Sentence examples for using the following parameter from inspiring English sources
The identification of full-length LTR retrotransposons with LTRharvest82 resulted in 143,957 non-overlapping candidate sequences using the following parameter settings: 'overlaps best -seed 30 -minlenltr 100 -maxlenltr 2000 -mindistltr 3000 -maxdistltr 25000 -similar 85 -mintsd 4 -maxtsd 20 -motif tgca -motifmis 1 -vic 60 -xdrop 5 -mat 2 -mis -2 -ins -3 -del -3'.
Starting from the lower bounds, first, an exhaustive batch simulation was carried out using the following parameter increment sizes: P1_increment_size = P2_increment_size = P3_increment_size = 0.03 m, (alpha _F)_increment_size = 3.0° to obtain an initial point for the SQP optimization phase.
The BLAST searches (BLASTX) were performed using the following parameter settings.
It started with the self-alignment of the produced sequences via BLAT analysis using the following parameter settings: -tileSize = 8, -minMatch = 1, -minScore = 10, -repMatch = –1 and -oneOff = 2. BLAT is one of the local pairwise alignment programmes.
Partitioning of the mouse genome into regions that are rich or poor in a particular histone modification was performed using ChIP-Part tool from the ChIP-Seq Analysis Server (URL: http://ccg.vital-it.ch/chipseq/chip_part.php) using the following parameter settings.
Here I report a preliminary simulation conducted using the following parameter values: threshold hysteresis, 30 min; supra- and sub-threshold Psw, 0.02062; suprathreshold Pws, initial 0.11715, final 0.00554; subthreshold Pws, initial 0.11593, final 0.00416.
In order to establish the association between nutrition risk and adverse clinical outcomes, the following variables were dichotomised/categorised using the following parameters which were selected on pragmatic grounds as being of probable clinical relevance.
using the following parameters.
We then quantified the behavior using the following parameters.
Histopathologic changes are scored using the following parameters.
Histopathological changes were scored using the following parameters.
