Sentence examples for using the fasta sequence from inspiring English sources
The obtained sequences were then compared to the two insertion junction sequences (500 bp flanking the junction that was determined by aligning with other duplicon copies) of the Xiao locus in the human genome using the FASTA sequence alignment program [ 23] for TSD identification.
Identical sequences observed in ≥10 reads were treated as a single sequence using the FASTA format with read count information, whereas those with <10 reads were discarded.
Once populated with the necessary controlled vocabularies, administrators may then upload genomic features (sequences) using the FASTA and GFF3 loaders.
These preliminary sequence identifications were supplemented by focused searches of the assembly using the FastA collection of programs and individual sequences of interest as queries [73].
Ensembl was used to retrieve the FASTA sequence for each retroposed sequence on the appropriate strand.
We used the tfasty program within the FASTA sequence comparison package (Pearson et al. 1997) to perform translated searches (allowing for frameshifts and premature stop codons) against the N. tetrasperma genome sequence.
Using the download button user can download the FASTA sequence file for a particular operon.
The fasta sequence headers were renamed using a custom script to conform to QIIME standards.
The fasta sequences used in this study are from the Daphnia pulex genome project.
The fasta sequences used in Figure 2 were taken from http://www.flybase.org (Drosophila melanogaster), http://www.wormbase.org (Caenorhabditis elegans), and http://www.yeastgenome.org (Saccharomyces cerevisiae).
To annotate the putative function of the 3,352 probe sets that exhibited significant expression changes during berry development, the FASTA sequences were BLAT-searched against the 8× genomic sequences of V. vinifera PN40024 (http://www.genoscope.cns.fr/externe/GenomeBrowser/Vitis/) by using each FASTA sequence as query to acquire a Genoscope ID number.
