Sentence examples for using the fasta package from inspiring English sources

The orthologue relationships were determined by best-best hit analyses using the FASTA package [87] on a desk-top computer.

Also, 191 BACs or PACs were downloaded from the NCBI GenBank and aligned to the human reference genome using the FASTA software package [ 44].

The percentages of similarity were determined using the FASTA network service (European Bioinformatics Institute Fasta Service; available from http://www.ebi.ac.uk/fasta).ac.uk/fasta

Identities were determined by the EBI (European Bioinformatics Institute) using the Fasta 3 network service [ 57].

Once populated with the necessary controlled vocabularies, administrators may then upload genomic features (sequences) using the FASTA and GFF3 loaders.

Orthologous protein sequences of N. crassa and C. globosum were then aligned using LALIGN in the FASTA package [36], [37], and % identity and % similarity scores were obtained.

Boundaries of introns were located by modeling intron secondary structures (Michel et al. 1989; Michel and Westhof 1990) and by comparing the sequences of intron-containing genes with those of intronless homologs using diverse programs of the FASTA package (Pearson and Lipman 1988; Pearson et al. 1997).

We classified predicted miRNAs into families by first comparing mature miRNAs with themselves using the ssearch35 program in the FASTA package (version 3.5) [ 74].

We used the program SSEARCH v36.3.5 from the FASTA package (fasta.bioch.virginia.edu/) (Pearson, 1996) to compute the optimal local alignment score between each human UCNE and each conserved fish genomic sequence.

The FASTA package [ 52] was used for all homology searches.

Complete linkage clustering: All pairwise combinations of P450 genes were aligned using amino acid sequences by the SSEARCH program [ 33] of the FASTA package (Pearson, W. R).