Sentence examples for using the fasta format from inspiring English sources

Identical sequences observed in ≥10 reads were treated as a single sequence using the FASTA format with read count information, whereas those with <10 reads were discarded.

Flower can also extract the sequence data to the Fasta format (using the -f option), associated qualities (-q) and the Fastq (Cock et al., 2010) format using either Phred (-Q) or Illumina (-I) type qualities.

Data sets of whole-genome sequence assemblies were downloaded in the FASTA format and searched using the BioEdit software and a string search for TTAGGG, TTTAGGG, TTGGGG, TTTTGGGG, TTTTAGGG, and TTAGG types of a telomeric sequence.

Likewise, the source data for orthology analysis (proteomes) has used a variety of formats (mostly ad hoc variations of the Fasta format).

We obtained the fasta format of the nr database on May 12 , 2011 and prepared it for use with MPI-BLAST [ 31].

Protein sequences in the FASTA format were taken from PubMed.

Although collapsed sequence data in the fasta format is also acceptable, converting fastq format into fasta format is generally a difficult task for biological researchers.

The FASTA formatted files, which are used as input files for codonW software, are proved as Supplementary data.

The fastq format is similar to the commonly used fasta format, but also stores data quality scores in addition to the sequence information.

BLAST-based search allows user to browse GROMO using sequence in FASTA format.

The sffinfo command was used to extract fasta format (sequence data) and quality (quality scores) files from a raw.sff file with –s and –q options, respectively.