In the other cases (breast, gastric cancer and renal cell carcinoma) we used the expression data provided by the authors.
Fits to the data have been obtained using the random phase expressions providing values of the interaction parameter and radius of gyration of the inner block.
Moreover, the anticollusion performance of the system can be accurately predicted by using the provided theoretical expressions.
Also in this case, Gaussian and Bernoulli matrices permit to obtain very similar detection performances and the anticollusion performance of the system can be accurately predicted by using the provided theoretical expressions.
We queried each miR-mRNA pair for co-expression using the tools provided on the webpage.
Nonetheless, an indication of spatial gene expression can be found using the filters provided.
Gene expression levels were calculated using the gene expression macro provided by BioRad and normalized to glyceraldehyde-3-phosphate dehydrogenase (GAPDH, stable expression in all samples) expression levels.
Using the gene expression data provided by van de Vijver et al. [ 27], we calculated the gene set activity score (GSAS) for each gene set contained in the C2 curated gene set collection of MSigDB.
Examination of immunoreactivity using the electron microscope provided evidence for expression of MR to the nucleus and extra nuclear sites including synapses of LA neurons.
We do not foresee major difficulties to the prediction of independent samples using the gene signature, provided the same expression quantification technology is used (Affymetrix GeneChip©).
