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The electrochemical treatment of the clay was carried out using the experimental assembly represented in Fig. 1.
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Otherwise, the strong interaction of the molecules with graphene (or HOPG), which is considered only indirectly in our simulation by using the experimental crystal structure, is responsible for stabilizing the π-stacked packing in the molecular assemblies.
Using the experimental set-up, it is possible to verify the model of individual components of the mount, and later on test the behavior of the whole assembly.
Figure 2 shows the experimental assembly used for these sequences.
Open image in new window Fig. 1 Schematic representation of the experimental assembly used for the electrochemical treatment of the studied bentonite.
Permeability estimation also requires an independent measurement of porosity, which in this case was determined using the Boyle's law, together with the initial and final pressure and the volumes of both upstream and downstream reservoirs in the experimental assembly.
Analysis using the Velvet assembly.
As commented earlier, the experimental tests were carried out by using the same set-up for both models, i.e. it was used the same assembly.
The resulting unique sequences were aligned on stickleback (v1.0 assembly), pufferfish (v8 assembly), medaka (v1.0 assembly) and zebrafish (Zv7 assembly) genome sequences using the Exonerate software [ 49].
2006 (hg18) assembly using the UCSC LiftOver tool.
We propose an experimental pipeline that uses the Illumina assembled contigs, in addition to just the reads, to complement the current limitations of the PacBio sequencing technology and assembly software.
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