Sentence examples for using the emboss tool from inspiring English sources

The GC contents of the 403 unitigs that had a hit against the P. infestans CDS were calculated using the EMBOSS tool Geecee [28] (Figure 3), as well as for all the 12,900 unitigs.

GC content was calculated using the EMBOSS tool geecee [ 63].

GC content was calculated using the EMBOSS tool geecee (Rice et al. 2000).

ORFs longer than 50 AAs between in-frame stop codons were extracted using the EMBOSS tool getorf [ 58].

Secondary protein structure was predicted using the Emboss tool Garnier [ 78], whilst the tertiary protein structure prediction and 3D modeling were performed using Phyre2 [ 37] and ESyPred [ 38].

Graphs of dN/dS ratios, HPD intervals and consensus sequences (generated using the EMBOSS tool cons [ 58]) were again generated using ggplot2.

Primer pairs were matched against bovine sequence from GenBank, NT and BTGI databases using the EMBOSS [ 26] primersearch tool.

ORFs were identified by using the EMBOSS software (version 5.0.0; emboss.sourceforge.net).net

Alignments of the parent genes and CG proteins were generated using the Emboss Needle program (http://emboss.sourceforge.net/) with default options.

GC content was calculated using the EMBOSS geecee program.

(G + C) content was calculated using the eMBOSS geecee program http://inn-temp.weizmann.ac.il/cgi-bin/emboss/geecee[ 63].