Sentence examples for using the emboss program from inspiring English sources

The location of CpG islands were predicted using the EMBOSS program CpGPlot [43] with default options.

Their percent identity to Os12g38210 was determined by pair wise Needleman-Wunsch alignments using the EMBOSS program 'needle' with default parameters [41].

The sites were mapped to 3 kb of promoter sequence of the β-catenin target genes using the Emboss program fuzznuc [31] allowing for 1 mismatch.

Matreshka amino acid composition analysis was performed using the EMBOSS program pepstats [ 28, 32].

Putative protein sequences were obtained by translating the cDNA sequences using the EMBOSS program "Transeq" [ 57].

Pairs of spacers were aligned using the EMBOSS program needle (Rice et al. 2000).

Alignments of the parent genes and CG proteins were generated using the Emboss Needle program (http://emboss.sourceforge.net/) with default options.

GC content was calculated using the EMBOSS geecee program.

(G + C) content was calculated using the eMBOSS geecee program http://inn-temp.weizmann.ac.il/cgi-bin/emboss/geecee[ 63].

Nucleotide sequence identities were calculated after the pairwise sequence alignment using the EMBOSS Water program (http://www.ebi.ac.uk/Tools/psa/emboss_water/nucleotide.html ).html

We aligned these protein sequences with human protein sequences using the Emboss Needle program (which implements the Needleman-Wunsch algorithm [ 27]) to extract identity, similarity and gap values for each rhesus protein model.