Sentence examples for using the emboss pairwise from inspiring English sources

The identity of the amino acid sequences of the orthologous V1Rs was calculated using the EMBOSS pairwise alignment algorithms [ 50].

The GTS1 protein sequences from both Oryza sativa and Zea mays were aligned to the Arabidopsis thaliana sequence using the EMBOSS global pairwise alignment algorithm [ 12] to get the percent identity between the proteins.

ORFs were identified by using the EMBOSS software (version 5.0.0; emboss.sourceforge.net).net

Nucleotide sequence identities were calculated after the pairwise sequence alignment using the EMBOSS Water program (http://www.ebi.ac.uk/Tools/psa/emboss_water/nucleotide.html ).html

Alignments of the parent genes and CG proteins were generated using the Emboss Needle program (http://emboss.sourceforge.net/) with default options.

GC content was calculated using the EMBOSS geecee program.

(G + C) content was calculated using the eMBOSS geecee program http://inn-temp.weizmann.ac.il/cgi-bin/emboss/geecee[ 63].

Sequences were translated to amino acids using the Emboss Transeq web application [ 87].

Sequence analysis was performed using the Emboss software suite [ 37], Clustal W [ 38] and 3DCoffee [ 39].

Sequence manipulation was carried out using the EMBOSS suite of programmes [ 54].

Introns were assigned by aligning the unigenes with the melon genomic sequence using the Emboss: est2genome [ 105].