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Therefore, during our simulations, all SVD-based pseudoinverses were computed using the default tolerance set by MATLAB.
Bonds involving protons were constrained with the SHAKE algorithm [73] using the default tolerance (1.0×10−5Å) and time steps of 2fs.
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The model was fitted using the optim function in the R software package (R Core Team, 2014) using the default Nelder Mead algorithm and a tolerance value of.
Raw spectral data was processed into Mascot Generic File (.mgf) format using the default method in the ChemStation Data Analysis module and ion searches were completed in MASCOT [ 36] with the search parameters of: peptide tolerance of 2 Da, parent ion tolerance of 0.8 m/z, ion charge of +1, +2 and +3.
The second keep using the default value of.
#ipadpro #applepencil I'm using the default Notes app.
Generally, statistical analyses were performed using the default settings.
Background signal was subtracted using the default rolling ball parameters.
Ordering was performed using the default parameters.
MATCH was executed using the default settings.
for base-calling, using the default parameters.
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