Sentence examples for using the default analyze from inspiring English sources
We generated additional networks using the default "analyze network" algorithm in MetaCore (50 nodes per sub-network).
Removing the direct interaction restriction from the MetaCore network-building algorithm, we built additional networks using the default "analyze network" algorithm, which generates a comprehensive network of interactions based on CNM genes prior to fragmenting it into smaller, more manageable sub-networks.
Microarray data were analyzed using the default 'guided workflow' option within Genespring 12.6.1 (Agilent, Santa Clara, CA).
Data was processed by using the default sequence analysis parameters and analyzed with Beckman Coulter CEQ 8000 software.
Groups of insertions overlapping each class of RepeatMasker element were analyzed using the default settings in GREAT.
For label-free quantification, the generated raw files were imported into the Progenesis LC-MS software (Nonlinear Dynamics, Version 4.0) and analyzed using the default parameter settings.
Upstream sequences (2000 bp) of up-regulated genes were analyzed using the default parameters in oPOSSUM 3.0 Sequence-based Single Site Analysis (SSA).
Reactions were set up in 96-well plates using a 7700HT Real-Time PCR System (Applied Biosystems, Foster City, CA), Optical data obtained were analyzed using the default and variable parameters available in the SDS software package (version 1.9.1; Applied Biosystems, Foster City, CA).
All sites with a minimum of 10× sequence coverage on each strand (20× total coverage) were analyzed using the default parameters of SAMtools version 0.1.12a (Li et al. 2009) to identify heterozygous positions.
For the surface protein predictions, all of the translated CDS entries from the M. flocculare genome and from the M. hyopneumoniae 7448 and M. hyorhinis HUB-1 genomes (NC_007332 and NC_014448 entries, respectively) were analyzed using the default parameters by the following software programs: SVMtm Transmembrane Domain Predictor [ 95], TMHMM Server v. 2.0 [ 96], SCAMPI [ 97], and PSORTb [ 98].
Scanned images were analyzed by using the default setting of GCOS 1.4.
